Package: prozor
Type: Package
Title: Minimal Protein Set Explaining Peptide Spectrum Matches
Version: 0.3.4
Authors@R: c(person("Witold", "Wolski",
        email = c("wewolski@gmail.com"),
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-6468-120X")))
Description: Determine minimal protein set explaining peptide spectrum
        matches. Utility functions for creating fasta amino acid
        databases with decoys and contaminants. Peptide false discovery
        rate estimation for target decoy search results on psm,
        precursor, peptide and protein level. Computing dynamic swath
        window sizes based on MS1 or MS2 signal distributions.
License: GPL-3
Imports: AhoCorasickTrie, docopt, Matrix, methods, purrr, protViz,
        readr, rlang, seqinr, stringr, dplyr
Suggests: knitr, rmarkdown,
URL: https://github.com/protviz/prozor
BugReports: https://github.com/protviz/prozor/issues
RoxygenNote: 7.3.2
Depends: R (>= 3.1.0)
VignetteBuilder: knitr
Collate: 'annotatePeptides.R' 'readjustWindow.R' 'cdsw.R'
        'computeFDR.R' 'createDecoyDB.R' 'create_fgcz_fasta_db.R'
        'greedy.R' 'hello.R' 'loadContaminantsFasta.R'
        'prepareMatrix.R' 'readFasta.R' 'removeSignalPeptides.R'
        'reverseSeq.R' 'tieResolution.R' 'writeFasta.R' 'zzz.R'
biocViews: Software, MassSpectrometry, Proteomics,
        ExperimentHubSoftware,
LazyData: true
Config/pak/sysreqs: libicu-dev libx11-dev zlib1g-dev
Repository: https://protviz.r-universe.dev
Date/Publication: 2025-10-23 14:43:08 UTC
RemoteUrl: https://github.com/protviz/prozor
RemoteRef: HEAD
RemoteSha: f79a1f1c260752651cd934d69e49ea11397d47b7
NeedsCompilation: no
Packaged: 2026-06-06 06:52:51 UTC; root
Author: Witold Wolski [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6468-120X>)
Maintainer: Witold Wolski <wewolski@gmail.com>